Nextflow Registry | nf-core/somalier/ancestry@0.0.0-0c7146d

nf-core/somalier/ancestry @ 0.0.0-0c7146d

Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @atrigila

Maintainers: @atrigila

Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs

Add the following snippet to your workflow script to include this module.

include { SOMALIER_ANCESTRY } from 'nf-core/somalier/ancestry'

MIT License

Process

`Name`	`SOMALIER_ANCESTRY`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`query_somalier_files` file	Set of somalier files for query samples. Obtained via somalier extract. `*.{somalier}`

#2 tuple

`meta2` map	Groovy Map containing labelled samples information e.g. [ id:'test', single_end:false ]
`labels_tsv` file	TSV for labelled samples. e.g. Somalier labels for 1kg https://raw.githubusercontent.com/brentp/somalier/master/scripts/ancestry-labels-1kg.tsv `*.{tsv}`
`labelled_somalier_files` file	Set of somalier files for labelled samples. e.g. Somalier files for 1kg https://zenodo.org/record/3479773/files/1kg.somalier.tar.gz?download=1 `*.{somalier}`

Output 3 channels

#1 tsv tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.somalier-ancestry.tsv` file	TSV with ancestry information for query and labelled samples. `*.somalier-ancestry.tsv`

#2 html tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.somalier-ancestry.html` file	html file with ancestry information for query and labelled samples. `*.somalier-ancestry.html`

#3 versions_somalier tuple

`${task.process}` string	The name of the process
`somalier` string	The name of the tool
`somalier 2>&1 \| sed -n 's/.version: $[0-9.]$.*/\1/p'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
somalier	Somalier can extract informative sites, evaluate relatedness, and perform quality-control on BAM/CRAM/BCF/VCF/GVCF or from jointly-called VCFs	https://github.com/brentp/somalier

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:15:37 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsomalier%2Fancestry/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/somalier/ancestry/blobs/sha256:a54faf1f600adbb4148f699209a2b4ac62d38c35e8c2f533e806c498cb6b2dfd
Size	3.2 KB
Checksum	sha256:a54faf1f600adbb4148f699209a2b4ac62d38c35e8c2f533e806c498cb6b2dfd
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:15:37 (UTC)		1	3.2 KB	-