nf-core/snpsift/annotate @ 0.0.0-0c7146d
Summary
Annotate a VCF file with another VCF file
Get started
Add the following snippet to your workflow script to include this module.
include { SNPSIFT_ANNOTATE } from 'nf-core/snpsift/annotate'
License
MIT License
Process
Name
|
SNPSIFT_ANNOTATE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information regarding vcf file provided e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
VCF file *.{vcf, vcf.gz}
|
vcf_tbi
file
|
Tabix file for compressed vcf provided *.{tbi}
|
#2
tuple
meta2
map
|
Groovy map containing sample information regarding database provided |
|---|---|
database
file
|
Database for use to annotate *.{vcf/vcf.gz}
|
dbs_tbi
file
|
Tabix file for compressed database provided *.{tbi}
|
Output
2 channels
#1
vcf
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.vcf
file
|
Variant Calling File annotated *.{vcf}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| snpsift | SnpSift is a toolbox that allows you to filter and manipulate annotated files | https://pcingola.github.io/SnpEff/ss_introduction/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:15:29 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsnpsift%2Fannotate/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/snpsift/annotate/blobs/sha256:25413acf1b085425dd9c3a0a588cccbb47af1a11d1c2a4de4e993fec69bdbcb2 |
| Size | 2.6 KB |
| Checksum | sha256:25413acf1b085425dd9c3a0a588cccbb47af1a11d1c2a4de4e993fec69bdbcb2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:15:29 (UTC) | 1 | 2.6 KB | - |