Nextflow Registry | nf-core/slamdunk/map@0.0.0-0c7146d

nf-core/slamdunk/map @ 0.0.0-0c7146d

Slamdunk read mapping using NextGenMap’s SLAMSeq alignment settings.

slamseq rna-seq mapping

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @haidyi

Maintainers: @haidyi

Slamdunk read mapping using NextGenMap’s SLAMSeq alignment settings.

Add the following snippet to your workflow script to include this module.

include { SLAMDUNK_MAP } from 'nf-core/slamdunk/map'

MIT License

Process

`Name`	`SLAMDUNK_MAP`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`input` file	Input FASTQ or BAM file(s) for SLAMseq analysis `*.{bam,fastq,fq,fastq.gz,fq.gz}`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. `[ id:'reference' ]`
`fasta` file	Reference genome FASTA file `*.{fasta,fa,fas,fna}`

Output 2 channels

#1 bam tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.bam` file	Mapped BAM file `*.bam`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
slamdunk	Slamdunk is a software tool for SLAMseq data analysis that performs mapping, filtering, SNP calling, and quantification of metabolic RNA labeling experiments.	http://t-neumann.github.io/slamdunk/docs.html

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:15:00 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fslamdunk%2Fmap/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/slamdunk/map/blobs/sha256:324f20ce45cbc20b364a249ed9a53aeec4a29b876b0d9cfa1a27e818f8fb2867
Size	2.7 KB
Checksum	sha256:324f20ce45cbc20b364a249ed9a53aeec4a29b876b0d9cfa1a27e818f8fb2867
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:15:00 (UTC)		1	2.7 KB	-