nf-core/singlem/dbdownload @ 0.0.0-0c7146d
Summary
Download the SingleM metapackage database used for metagenome profiling
Get started
Add the following snippet to your workflow script to include this module.
include { SINGLEM_DBDOWNLOAD } from 'nf-core/singlem/dbdownload'
License
MIT License
Process
Name
|
SINGLEM_DBDOWNLOAD |
|---|
Output
2 channels
#1
singlem_database
*.smpkg.zb
file
|
SingleM metapackage database file used for taxonomic profiling *.smpkg.zb
|
|---|
#2
versions_singlem
tuple
${task.process}
string
|
The name of the process |
|---|---|
singlem
string
|
The name of the tool |
singlem --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| singlem | SingleM is a tool for profiling shotgun metagenomes. It determines the relative abundance of bacterial and archaeal taxa in a sample and can also profile dsDNA phages. It has particular strength in dealing with novel lineages and is suitable for tasks such as assessing eukaryotic contamination, finding bias in genome recovery, and lineage-targeted MAG recovery. | https://wwood.github.io/singlem |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:14:11 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsinglem%2Fdbdownload/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/singlem/dbdownload/blobs/sha256:40ad359a04c2d17dd8d44cfffa23d89ac8e65794423a49ea2ca72d6dba9fc97f |
| Size | 2.2 KB |
| Checksum | sha256:40ad359a04c2d17dd8d44cfffa23d89ac8e65794423a49ea2ca72d6dba9fc97f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:14:11 (UTC) | 1 | 2.2 KB | - |