Nextflow Registry | nf-core/shinyngs/staticdifferential@0.0.0-0c7146d

nf-core/shinyngs/staticdifferential @ 0.0.0-0c7146d

Make plots for interpretation of differential abundance statistics

rnaseq plot differential shinyngs

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @pinin4fjords

Maintainers: @pinin4fjords

Make plots for interpretation of differential abundance statistics

Add the following snippet to your workflow script to include this module.

include { SHINYNGS_STATICDIFFERENTIAL } from 'nf-core/shinyngs/staticdifferential'

MIT License

Process

`Name`	`SHINYNGS_STATICDIFFERENTIAL`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing contrast information, to be passed as reference and target levels, like '--reference_level $meta.reference --treatment_level $meta.target' e.g. [ variable:'treatment', reference:'treated', control:'saline', blocking:'' ]
`differential_result` file	statistic differential results

#2 tuple

`meta2` map	Groovy Map containing information on experiment represented by max, features and samples, at a minimum an id. e.g. [ id:'test' ]
`sample` file	CSV or TSV-format sample sheet with sample metadata
`feature_meta` file	CSV or TSV-format feature (e.g. gene) metadata
`assay_file` file	CSV or TSV matrix file to use alongside differential statistics in interpretation. Usually a normalised form.

Output 3 channels

#1 volcanos_png tuple

`meta` map	Groovy Map containing contrast information e.g. [ variable:'treatment', reference:'treated', control:'saline', blocking:'' ]
`*/png/volcano.png` file	Meta-keyed tuple containing a PNG output for a volcano plot built from the differential result table.

#2 volcanos_html tuple

`meta` map	Groovy Map containing contrast information e.g. [ variable:'treatment', reference:'treated', control:'saline', blocking:'' ]
`*/html/volcano.html` file	Meta-keyed tuple containing an HTML output for a volcano plot built from the differential result table.

#3 versions_shinyngs tuple

`${task.process}` string	The name of the process
`shinyngs` string	The name of the tool
`Rscript -e "library(shinyngs); cat(as.character(packageVersion('shinyngs')))"` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
shinyngs	Provides Shiny applications for various array and NGS applications. Currently very RNA-seq centric, with plans for expansion.	https://github.com/pinin4fjords/shinyngs

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:13:56 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fshinyngs%2Fstaticdifferential/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/shinyngs/staticdifferential/blobs/sha256:07f80085aea5e4d402899e736b386117cb50f50ec6cd15f5dfcc2e16d2086dc4
Size	3.5 KB
Checksum	sha256:07f80085aea5e4d402899e736b386117cb50f50ec6cd15f5dfcc2e16d2086dc4
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:13:56 (UTC)		1	3.5 KB	-