nf-core/seqtk/trim @ 0.0.0-0c7146d
Summary
Trim low quality bases from FastQ files
Get started
Add the following snippet to your workflow script to include this module.
include { SEQTK_TRIM } from 'nf-core/seqtk/trim'
License
MIT License
Process
Name
|
SEQTK_TRIM |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input FastQ files *.{fastq.gz}
|
Output
2 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Filtered FastQ files *.{fastq.gz}
|
#2
versions_seqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqtk
string
|
The name of the tool |
seqtk 2>&1 | sed -n 's/^Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqtk | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | https://github.com/lh3/seqtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqtk%2Ftrim/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqtk/trim/blobs/sha256:c2bb31cb165394c67021147ac50fde97f58b0a73ddba676d8e9e44ff40ca2783 |
| Size | 2.2 KB |
| Checksum | sha256:c2bb31cb165394c67021147ac50fde97f58b0a73ddba676d8e9e44ff40ca2783 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:21 (UTC) | 1 | 2.2 KB | - |