nf-core/seqtk/subseq @ 0.0.0-0c7146d
Summary
Select only sequences that match the filtering condition
Get started
Add the following snippet to your workflow script to include this module.
include { SEQTK_SUBSEQ } from 'nf-core/seqtk/subseq'
License
MIT License
Process
Name
|
SEQTK_SUBSEQ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
sequences
file
|
FASTQ/FASTA file *.{fq,fq.gz,fa,fa.gz}
|
filter_list
file
|
BED file or a text file with a list of sequence names *.{bed,lst}
|
|---|
Output
2 channels
#1
sequences
tuple
meta
file
|
FASTQ/FASTA file *.{fq.gz,fa.gz}
|
|---|---|
*.gz
file
|
FASTQ/FASTA file *.{fq.gz,fa.gz}
|
#2
versions_seqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqtk
string
|
The name of the tool |
seqtk 2>&1 | sed -n 's/^Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqtk | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format | https://github.com/lh3/seqtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:19 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqtk%2Fsubseq/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqtk/subseq/blobs/sha256:9708a93cd4b36ab529daef21c4011abf3646fe068a187ed4b0306c5c10cf5417 |
| Size | 2.4 KB |
| Checksum | sha256:9708a93cd4b36ab529daef21c4011abf3646fe068a187ed4b0306c5c10cf5417 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:19 (UTC) | 1 | 2.4 KB | - |