nf-core/seqtk/rename @ 0.0.0-0c7146d
Summary
Rename sequence names in FASTQ or FASTA files.
Get started
Add the following snippet to your workflow script to include this module.
include { SEQTK_RENAME } from 'nf-core/seqtk/rename'
License
MIT License
Process
Name
|
SEQTK_RENAME |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
sequences
file
|
A FASTQ or FASTA file *.{fastq.gz, fastq, fq, fq.gz, fasta, fastq.gz, fa, fa.gz, fas, fas.gz, fna, fna.gz}
|
Output
2 channels
#1
sequences
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
*.gz
file
|
FASTQ/FASTA file containing renamed sequences *.{fastq.gz, fasta.gz}
|
#2
versions_seqtk
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqtk
string
|
The name of the tool |
seqtk 2>&1 | sed -n 's/^Version: //p'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqtk | Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format. The seqtk rename command renames sequence names. | https://github.com/lh3/seqtk |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:13:13 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqtk%2Frename/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqtk/rename/blobs/sha256:ccafbf0d87a4e821a112ce5950c4b4a3a76cec18d77b56862eb4e8cbc7f94a52 |
| Size | 2.3 KB |
| Checksum | sha256:ccafbf0d87a4e821a112ce5950c4b4a3a76cec18d77b56862eb4e8cbc7f94a52 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:13:13 (UTC) | 1 | 2.3 KB | - |