nf-core/seqkit/rmdup @ 0.0.0-0c7146d
Summary
Transforms sequences (extract ID, filter by length, remove gaps, reverse complement...)
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_RMDUP } from 'nf-core/seqkit/rmdup'
License
MIT License
Process
Name
|
SEQKIT_RMDUP |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fastx
file
|
Input fasta/fastq file *.{fsa,fas,fa,fasta,fastq,fq,fsa.gz,fas.gz,fa.gz,fasta.gz,fastq.gz,fq.gz}
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.log
file
|
Log containing information regarding removed duplicates *.log
|
#2
fastx
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}.${extension}
file
|
Output fasta/fastq file *.{fasta,fasta.gz,fastq,fastq.gz}
|
#3
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | A cross-platform and ultrafast toolkit for FASTA/Q file manipulation | https://bioinf.shenwei.me/seqkit/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:12:49 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Frmdup/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqkit/rmdup/blobs/sha256:22f5025ea5748613ba3cd5b2a4245e45159ea7035532d1cc9e66e292051b9f68 |
| Size | 3.1 KB |
| Checksum | sha256:22f5025ea5748613ba3cd5b2a4245e45159ea7035532d1cc9e66e292051b9f68 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:12:49 (UTC) | 1 | 3.1 KB | - |