nf-core/seqkit/replace @ 0.0.0-0c7146d
Summary
Use seqkit to find/replace strings within sequences and sequence headers
Get started
Add the following snippet to your workflow script to include this module.
include { SEQKIT_REPLACE } from 'nf-core/seqkit/replace'
License
MIT License
Process
Name
|
SEQKIT_REPLACE |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
fastx
file
|
fasta/q file *.{fasta,fastq,fa,fq,fas,fna,faa}*
|
Output
2 channels
#1
fastx
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fast*
file
|
fasta/q file with replaced values *.{fasta,fastq,fa,fq,fas,fna,faa}*
|
#2
versions_seqkit
tuple
${task.process}
string
|
The name of the process |
|---|---|
seqkit
string
|
The name of the tool |
seqkit version | sed 's/^.*v//'
eval
|
The expression to obtain the version of seqkit |
| Tool | Description | Homepage |
|---|---|---|
| seqkit | Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen. | https://bioinf.shenwei.me/seqkit/usage/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:12:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Freplace/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqkit/replace/blobs/sha256:ceded6917d25273a15de9212a5122fdb5c9765deb91696c01991c95747f09e53 |
| Size | 2.7 KB |
| Checksum | sha256:ceded6917d25273a15de9212a5122fdb5c9765deb91696c01991c95747f09e53 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:12:47 (UTC) | 1 | 2.7 KB | - |