Nextflow Registry | nf-core/seqkit/concat@0.0.0-0c7146d

nf-core/seqkit/concat @ 0.0.0-0c7146d

Concatenating multiple uncompressed sequence files together

concat fasta fastq merge

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @DLBPointon

Maintainers: @DLBPointon

Concatenating multiple uncompressed sequence files together

Add the following snippet to your workflow script to include this module.

include { SEQKIT_CONCAT } from 'nf-core/seqkit/concat'

MIT License

Process

`Name`	`SEQKIT_CONCAT`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`input` file	Sequence file in fasta/q format `*.{fasta,fastq,fa,fq,fas,fna,faa}`

Output 2 channels

#1 fastx tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', single_end:false ]`
`*.{fasta,fastq,fa,fq,fas,fna,faa}` file	A concatenated sequence file `*.{fasta,fastq,fa,fq,fas,fna,faa}`

#2 versions_seqkit tuple

`${task.process}` string	The name of the process
`seqkit` string	The name of the tool
`seqkit version \| sed 's/^.*v//'` eval	The expression to obtain the version of the tool

Tool	Description	Homepage
seqkit	Cross-platform and ultrafast toolkit for FASTA/Q file manipulation, written by Wei Shen.	https://github.com/shenwei356/seqkit

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:12:36 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseqkit%2Fconcat/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seqkit/concat/blobs/sha256:1b5b46b194c5447bc5cb56e76397976198bee4fbf8e349642f44e88aceb27410
Size	2.6 KB
Checksum	sha256:1b5b46b194c5447bc5cb56e76397976198bee4fbf8e349642f44e88aceb27410
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:12:36 (UTC)		1	2.6 KB	-