Nextflow Registry | nf-core/sentieon/dnamodelapply@0.0.0-0c7146d

nf-core/sentieon/dnamodelapply @ 0.0.0-0c7146d

modifies the input VCF file by adding the MLrejected FILTER to the variants

dnamodelapply vcf filter sentieon

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @ramprasadn

Maintainers: @ramprasadn

modifies the input VCF file by adding the MLrejected FILTER to the variants

Add the following snippet to your workflow script to include this module.

include { SENTIEON_DNAMODELAPPLY } from 'nf-core/sentieon/dnamodelapply'

MIT License

Process

`Name`	`SENTIEON_DNAMODELAPPLY`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`vcf` file	INPUT VCF file `*.{vcf,vcf.gz}`
`idx` file	Index of the input VCF file `*.{tbi}`

#2 tuple

`meta2` map	Groovy Map containing reference information e.g. `[ id:'test' ]`
`fasta` file	Genome fasta file `*.{fa,fasta}`

#3 tuple

`meta3` map	Groovy Map containing reference information e.g. `[ id:'test' ]`
`fai` file	Index of the genome fasta file `*.fai`

#4 tuple

`meta4` map	Groovy Map containing reference information e.g. `[ id:'test' ]`
`ml_model` file	machine learning model file `*.model`

Output 3 channels

#1 tbi tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.vcf.gz.tbi` file	Index of the input VCF file `*.{tbi}`

#2 vcf tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'test', single_end:false ]`
`*.vcf.gz` file	INPUT VCF file `*.{vcf,vcf.gz}`

#3 versions_sentieon tuple

`${task.process}` string	The process the versions were collected from
`sentieon` string	The tool name
`sentieon driver --version \| sed "s/.*-//g"` string	The command used to generate the version of the tool

Tool	Description	Homepage
sentieon	Sentieon® provides complete solutions for secondary DNA/RNA analysis for a variety of sequencing platforms, including short and long reads. Our software improves upon BWA, STAR, Minimap2, GATK, HaplotypeCaller, Mutect, and Mutect2 based pipelines and is deployable on any generic-CPU-based computing system.	https://www.sentieon.com/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:11:58 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsentieon%2Fdnamodelapply/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/sentieon/dnamodelapply/blobs/sha256:37e666b49d0f83f7d855b1a7bf6f408c01060595043807b0db1ce40ac5c5ef04
Size	3.4 KB
Checksum	sha256:37e666b49d0f83f7d855b1a7bf6f408c01060595043807b0db1ce40ac5c5ef04
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:11:58 (UTC)		1	3.4 KB	-