nf-core/semibin/singleeasybin @ 0.0.0-0c7146d
Summary
metagenomic binning with self-supervised learning
Get started
Add the following snippet to your workflow script to include this module.
include { SEMIBIN_SINGLEEASYBIN } from 'nf-core/semibin/singleeasybin'
License
MIT License
Process
Name
|
SEMIBIN_SINGLEEASYBIN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
fasta
file
|
Fasta file of the assembled contigs *.{fa,fasta,fna,fa.gz,fasta.gz,fna.gz}
|
bam
file
|
BAM/CRAM/SAM file *.{bam,cram}
|
Output
5 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/*.csv
file
|
generated files *.csv
|
#2
tsv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/*.tsv
file
|
information of bins *.tsv
|
#3
model
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/*.h5
file
|
model file *.h5
|
#4
output_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test' ] |
|---|---|
${prefix}/output_bins/*.fa.gz
file
|
precluster fasta files *.fa
|
#5
versions_semibin
tuple
${task.process}
string
|
The name of the process |
|---|---|
SemiBin
string
|
The name of the tool |
SemiBin2 --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| semibin | Metagenomic binning with semi-supervised siamese neural network | https://github.com/BigDataBiology/SemiBin |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:11:43 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsemibin%2Fsingleeasybin/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/semibin/singleeasybin/blobs/sha256:db6d79c1be9a32d7409d94ae7915045a434157ec402b4f82875b8500dca89bfb |
| Size | 3.8 KB |
| Checksum | sha256:db6d79c1be9a32d7409d94ae7915045a434157ec402b4f82875b8500dca89bfb |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:11:43 (UTC) | 1 | 3.8 KB | - |