nf-core/segemehl/index @ 0.0.0-0c7146d
Summary
Generate genome indices for segemehl align
Get started
Add the following snippet to your workflow script to include this module.
include { SEGEMEHL_INDEX } from 'nf-core/segemehl/index'
License
MIT License
Process
Name
|
SEGEMEHL_INDEX |
|---|
Input
1 channel
fasta
file
|
Reference genome FASTA file *.{fa,fasta}
|
|---|
Output
2 channels
#1
index
*.idx
file
|
Segemehl index file *.{idx}
|
|---|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| segemehl | A multi-split mapping algorithm for circular RNA, splicing, trans-splicing and fusion detection | https://www.bioinf.uni-leipzig.de/Software/segemehl/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:11:39 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsegemehl%2Findex/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/segemehl/index/blobs/sha256:7bf64ab92d44600a1c15d8f7e2a1a20ef8045e86f7dd50ef3bf44eeadb08711f |
| Size | 2.0 KB |
| Checksum | sha256:7bf64ab92d44600a1c15d8f7e2a1a20ef8045e86f7dd50ef3bf44eeadb08711f |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:11:39 (UTC) | 1 | 2.0 KB | - |