nf-core/seacr/callpeak @ 0.0.0-0c7146d
Summary
Call peaks using SEACR on sequenced reads in bedgraph format
Get started
Add the following snippet to your workflow script to include this module.
include { SEACR_CALLPEAK } from 'nf-core/seacr/callpeak'
License
MIT License
Process
Name
|
SEACR_CALLPEAK |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bedgraph
file
|
The target bedgraph file from which the peaks will be calculated. |
ctrlbedgraph
file
|
Control (IgG) data bedgraph file to generate an empirical threshold for peak calling. |
threshold
integer
|
Threshold value used to call peaks if the ctrlbedgraph input is set to []. Set to 1 if using a control bedgraph |
|---|
Output
2 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
Bed file containing the calculated peaks. *.bed
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| seacr | SEACR is intended to call peaks and enriched regions from sparse CUT&RUN or chromatin profiling data in which background is dominated by "zeroes" (i.e. regions with no read coverage). | https://github.com/FredHutch/SEACR |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:11:35 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fseacr%2Fcallpeak/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/seacr/callpeak/blobs/sha256:25b35c339193d1eb10803378ef3b77ad6c1b590ddd04ff59d9fa5736e78f2849 |
| Size | 2.7 KB |
| Checksum | sha256:25b35c339193d1eb10803378ef3b77ad6c1b590ddd04ff59d9fa5736e78f2849 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:11:35 (UTC) | 1 | 2.7 KB | - |