nf-core/scimap/mcmicro @ 0.0.0-0c7146d
Summary
SCIMAP is a suite of tools that enables spatial single-cell analyses
Get started
Add the following snippet to your workflow script to include this module.
include { SCIMAP_MCMICRO } from 'nf-core/scimap/mcmicro'
License
MIT License
Process
Name
|
SCIMAP_MCMICRO |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
cellbyfeature
file
|
CSV file with cell by feature table *.{csv}
|
Output
3 channels
#1
csv
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.csv
file
|
Sorted CSV file *.{csv}
|
#2
h5ad
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.h5ad
file
|
Sorted H5AD file *.{h5ad}
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| scimap | Scimap is a scalable toolkit for analyzing spatial molecular data. | https://scimap.xyz/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 0c7146d85582628b5d1034504702fa808632b1af |
| Release Date | 08 Apr 2026 19:11:23 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fscimap%2Fmcmicro/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/scimap/mcmicro/blobs/sha256:177000e79ca829cc4b3f2588d5aa5a9fe5ddcb2c984395170768c1fbe5117ba3 |
| Size | 2.4 KB |
| Checksum | sha256:177000e79ca829cc4b3f2588d5aa5a9fe5ddcb2c984395170768c1fbe5117ba3 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:11:23 (UTC) | 1 | 2.4 KB | - |