nf-core/samshee @ 0.0.0-0c7146d
Summary
Module to validate illumina® Sample Sheet v2 files.
Get started
Add the following snippet to your workflow script to include this module.
include { SAMSHEE } from 'nf-core/samshee'
License
MIT License
Process
Name
|
SAMSHEE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', lane:1 ] |
|---|---|
samplesheet
file
|
illumina v2 samplesheet *.{csv}
|
file_schema_validator
string
|
Optional JSON file used additional samplesheet validation settings |
|---|
Output
3 channels
#1
samplesheet
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', lane:1 ] |
|---|---|
*_formatted.csv
file
|
illumina v2 samplesheet |
#2
versions_python
tuple
${task.process}
string
|
The name of the process |
|---|---|
python
string
|
The name of the tool |
python --version | sed -e "s/Python //g"
eval
|
The expression to obtain the version of the tool |
#3
versions_samshee
tuple
${task.process}
string
|
The name of the process |
|---|---|
samshee
string
|
The name of the tool |
0.2.13
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| samshee | A schema-agnostic parser and writer for illumina® sample sheets v2 and similar documents. | https://github.com/lit-regensburg/samshee |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:09:33 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsamshee/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/samshee/blobs/sha256:5a46f0caa77de56dd11d200168cb2ee852561b4b23412c0e9c0f6acb710d9ce0 |
| Size | 3.0 KB |
| Checksum | sha256:5a46f0caa77de56dd11d200168cb2ee852561b4b23412c0e9c0f6acb710d9ce0 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:09:33 (UTC) | 1 | 3.0 KB | - |