nf-core/saltshaker/plot @ 0.0.0-0c7146d
Summary
mtDNA deletion and duplication plotting downstream of mitosalt
Get started
Add the following snippet to your workflow script to include this module.
include { SALTSHAKER_PLOT } from 'nf-core/saltshaker/plot'
License
MIT License
Process
Name
|
SALTSHAKER_PLOT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
classify
file
|
classify metadata file from saltshaker_classify *_classify_metadata.tsv
|
Output
2 channels
#1
plot
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*saltshaker.png
file
|
png file with saltshaker plot *saltshaker.png
|
#2
versions_saltshaker
tuple
${task.process}
string
|
The name of the process |
|---|---|
saltshaker
string
|
The name of the tool |
1.0.0
string
|
Hardcoded version of saltshaker used in the module |
| Tool | Description | Homepage |
|---|---|---|
| saltshaker | A Python package for classifying and visualizing mitochondrial structural variants from MitoSAlt pipeline output. | https://github.com/aksenia/saltshaker |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:09:21 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fsaltshaker%2Fplot/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/saltshaker/plot/blobs/sha256:7e924bfabffb22bf248814647fcf0cec8b630a59702d25f8bdb4d8a9bec81c2b |
| Size | 2.5 KB |
| Checksum | sha256:7e924bfabffb22bf248814647fcf0cec8b630a59702d25f8bdb4d8a9bec81c2b |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:09:21 (UTC) | 1 | 2.5 KB | - |