nf-core/s4pred/runmodel @ 0.0.0-0c7146d
Summary
Prediction of a protein's secondary structure from its amino acid sequence
Get started
Add the following snippet to your workflow script to include this module.
include { S4PRED_RUNMODEL } from 'nf-core/s4pred/runmodel'
License
MIT License
Process
Name
|
S4PRED_RUNMODEL |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta
file
|
protein FASTA file containing one or more amino acid sequences to predict their respective secondary structures *.{fasta,fa,fas,fna,faa}
|
Output
2 channels
#1
preds
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
${prefix}
directory
|
A folder with all the prediction outputs ${prefix}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| s4pred | Accurate prediction of a protein's secondary structure from its amino acid sequence | https://github.com/psipred/s4pred |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:09:08 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fs4pred%2Frunmodel/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/s4pred/runmodel/blobs/sha256:189dbb016d6ecef8df442873d60c451f2da33d93a4cb5104310d5d52e534b08c |
| Size | 2.6 KB |
| Checksum | sha256:189dbb016d6ecef8df442873d60c451f2da33d93a4cb5104310d5d52e534b08c |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:09:08 (UTC) | 1 | 2.6 KB | - |