Nextflow Registry | nf-core/rundbcan/cazymeannotation@0.0.0-0c7146d

nf-core/rundbcan/cazymeannotation @ 0.0.0-0c7146d

CAZyme annotation module for the dbcan pipeline. This module is used to annotate carbohydrate-active enzymes (CAZymes) from genomic data using the dbCAN annotation tool.

dbCAN download CAZyme CAZyme gene Cluster genomes

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @Xinpeng021001

Maintainers: @Xinpeng021001

Summary

CAZyme annotation module for the dbcan pipeline. This module is used to annotate carbohydrate-active enzymes (CAZymes) from genomic data using the dbCAN annotation tool.

Get started

Add the following snippet to your workflow script to include this module.

include { RUNDBCAN_CAZYMEANNOTATION } from 'nf-core/rundbcan/cazymeannotation'

License

MIT License

Process

`Name`	`RUNDBCAN_CAZYMEANNOTATION`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`input_raw_data` file	FASTA file for protein sequences. `*.{fasta,fa,faa}`

`dbcan_db` directory	Path to the dbCAN database directory.

Output 5 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 dbcanhmm_results tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`${prefix}_dbCAN_hmm_results.tsv` file	TSV file containing the detailed dbCAN HMM results for CAZyme annotation.

#3 dbcansub_results tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`${prefix}_dbCANsub_hmm_results.tsv` file	TSV file containing the detailed dbCAN subfamily results for CAZyme annotation.

#4 cazyme_annotation tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`${prefix}_overview.tsv` file	TSV file containing the results of dbCAN CAZyme annotation.

#5 dbcandiamond_results tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1']`
`${prefix}_diamond.out` file	TSV file containing the detailed dbCAN diamond results for CAZyme annotation.

Tool	Description	Homepage
dbcan	Standalone version of dbCAN annotation tool for automated CAZyme annotation.	https://bcb.unl.edu/dbCAN2/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:08:58 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frundbcan%2Fcazymeannotation/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rundbcan/cazymeannotation/blobs/sha256:17b315de6fbaead822a9495f8c5e858791cbe4795ff0ebf477caf41c65cf992b
Size	2.9 KB
Checksum	sha256:17b315de6fbaead822a9495f8c5e858791cbe4795ff0ebf477caf41c65cf992b
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:08:58 (UTC)		1	2.9 KB	-