nf-core/rtn/tni @ 0.0.0-0c7146d
Summary
Uses the RTN R package for transcriptional regulatory network inference (TNI).
Get started
Add the following snippet to your workflow script to include this module.
include { RTN_TNI } from 'nf-core/rtn/tni'
License
MIT License
Process
Name
|
RTN_TNI |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
expression_matrix
file
|
expression matrix in TSV format *.tsv
|
Output
5 channels
#1
tni
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni.rds
file
|
RDS R Object with the TNI object tni.rds
|
#2
tni_perm
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni_permutated.rds
file
|
RDS R Object with the TNI object after permutation tni_permutated.rds
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#4
tni_filtered
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni_filtered.rds
file
|
RDS R Object with the TNI object after permutation, bootstrap and filtering tni_filtered.rds
|
#5
tni_bootstrap
tuple
meta
file
|
RDS R Object with the TNI object tni.rds
|
|---|---|
tni_bootstrapped.rds
file
|
RDS R Object with the TNI object after permutation and bootstrap tni_bootstrapped.rds
|
| Tool | Description | Homepage |
|---|---|---|
| rtn | RTN: Reconstruction of Transcriptional regulatory Networks and analysis of regulons | https://www.bioconductor.org/packages/release/bioc/html/RTN.html |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:08:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frtn%2Ftni/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rtn/tni/blobs/sha256:cbd9438d56a92343dc1d1b33818d4fd463d74c3ae8d70530340e37172a7df310 |
| Size | 4.5 KB |
| Checksum | sha256:cbd9438d56a92343dc1d1b33818d4fd463d74c3ae8d70530340e37172a7df310 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:08:56 (UTC) | 1 | 4.5 KB | - |