nf-core/rtgtools/rocplot @ 0.0.0-0c7146d
Summary
Plot ROC curves from vcfeval ROC data files, either to an image, or an interactive GUI. The interactive GUI isn't possible for nextflow.
Get started
Add the following snippet to your workflow script to include this module.
include { RTGTOOLS_ROCPLOT } from 'nf-core/rtgtools/rocplot'
License
MIT License
Process
Name
|
RTGTOOLS_ROCPLOT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
input
file
|
Input TSV ROC files created with RTGTOOLS_VCFEVAL *.tsv.gz
|
Output
3 channels
#1
png
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.png
file
|
The resulting rocplot in PNG format *.png
|
#2
svg
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.svg
file
|
The resulting rocplot in SVG format *.svg
|
#3
versions_rtgtools
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rtgtools
string
|
The name of the tool |
rtg version | sed 's/Product: RTG Tools //; q'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rtgtools | RealTimeGenomics Tools -- Utilities for accurate VCF comparison and manipulation | https://www.realtimegenomics.com/products/rtg-tools |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:08:51 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frtgtools%2Frocplot/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rtgtools/rocplot/blobs/sha256:e4bf803509e6e960bd1df640903a9ef9a966fdb6876e4350c34b9e36cd8faf12 |
| Size | 2.7 KB |
| Checksum | sha256:e4bf803509e6e960bd1df640903a9ef9a966fdb6876e4350c34b9e36cd8faf12 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:08:51 (UTC) | 1 | 2.7 KB | - |