nf-core/rseqc/tin @ 0.0.0-0c7146d
Summary
Calculate TIN (transcript integrity number) from RNA-seq reads
Get started
Add the following snippet to your workflow script to include this module.
include { RSEQC_TIN } from 'nf-core/rseqc/tin'
License
MIT License
Process
Name
|
RSEQC_TIN |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
Input BAM file *.{bam}
|
bai
file
|
Index for input BAM file *.{bai}
|
bed
file
|
BED file containing the reference gene model *.{bed}
|
|---|
Output
3 channels
#1
txt
tuple
meta
file
|
TXT file containing tin.py results summary *.txt
|
|---|---|
*.txt
file
|
TXT file containing tin.py results summary *.txt
|
#2
xls
tuple
meta
file
|
TXT file containing tin.py results summary *.txt
|
|---|---|
*.xls
file
|
XLS file containing tin.py results *.xls
|
#3
versions_rseqc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rseqc
string
|
The tool name |
tin.py --version | sed "s/tin.py //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rseqc | RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. | http://rseqc.sourceforge.net/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:08:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frseqc%2Ftin/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rseqc/tin/blobs/sha256:41b68d7a7459640e2300454d21c91e3fea132acab84c5f64c5f990891bc61dc1 |
| Size | 2.6 KB |
| Checksum | sha256:41b68d7a7459640e2300454d21c91e3fea132acab84c5f64c5f990891bc61dc1 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:08:44 (UTC) | 1 | 2.6 KB | - |