nf-core/rseqc/junctionsaturation @ 0.0.0-0c7146d
Summary
compare detected splice junctions to reference gene model
Get started
Add the following snippet to your workflow script to include this module.
include { RSEQC_JUNCTIONSATURATION } from 'nf-core/rseqc/junctionsaturation'
License
MIT License
Process
Name
|
RSEQC_JUNCTIONSATURATION |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
the alignment in bam format *.{bam}
|
bai
file
|
BAM index file *.{bai}
|
bed
file
|
a bed file for the reference gene model *.{bed}
|
|---|
Output
3 channels
#1
pdf
tuple
meta
file
|
Junction saturation report *.pdf
|
|---|---|
*.pdf
file
|
Junction saturation report *.pdf
|
#2
rscript
tuple
meta
file
|
Junction saturation report *.pdf
|
|---|---|
*.r
file
|
Junction saturation R-script *.r
|
#3
versions_rseqc
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rseqc
string
|
The tool name |
junction_saturation.py --version | sed "s/junction_saturation.py //"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rseqc | RSeQC package provides a number of useful modules that can comprehensively evaluate high throughput sequence data especially RNA-seq data. | http://rseqc.sourceforge.net/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:08:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frseqc%2Fjunctionsaturation/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rseqc/junctionsaturation/blobs/sha256:ce20454f54b1a802d157bbadf64cd13f7507fa1fe11ba4492d28b69954567bb5 |
| Size | 2.6 KB |
| Checksum | sha256:ce20454f54b1a802d157bbadf64cd13f7507fa1fe11ba4492d28b69954567bb5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:08:37 (UTC) | 1 | 2.6 KB | - |