nf-core/rsem/preparereference @ 0.0.0-0c7146d
Summary
Prepare a reference genome for RSEM
Get started
Add the following snippet to your workflow script to include this module.
include { RSEM_PREPAREREFERENCE } from 'nf-core/rsem/preparereference'
License
MIT License
Process
Name
|
RSEM_PREPAREREFERENCE |
|---|
Input
2 channels
fasta
file
|
The Fasta file of the reference genome *.{fasta,fa}
|
|---|
gtf
file
|
The GTF file of the reference genome *.gtf
|
|---|
Output
4 channels
#1
index
rsem
directory
|
RSEM index directory rsem
|
|---|
#2
versions_rsem
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
rsem
string
|
The tool name |
rsem-calculate-expression --version | sed -e "s/Current version: RSEM v//g"
eval
|
The expression to obtain the version of the tool |
#3
versions_star
tuple
${task.process}
string
|
The process the versions were collected from |
|---|---|
star
string
|
The tool name |
STAR --version | sed -e "s/STAR_//g"
eval
|
The expression to obtain the version of the tool |
#4
transcript_fasta
*transcripts.fa
file
|
Fasta file of transcripts rsem/*transcripts.fa
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| rseqc | RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome | https://github.com/deweylab/RSEM |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:08:28 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frsem%2Fpreparereference/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rsem/preparereference/blobs/sha256:5e814e7b1f3b5c6949fc0cb6a3d16365745301cc13e4291c2f11b732e4f3627d |
| Size | 2.8 KB |
| Checksum | sha256:5e814e7b1f3b5c6949fc0cb6a3d16365745301cc13e4291c2f11b732e4f3627d |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:08:28 (UTC) | 1 | 2.8 KB | - |