Nextflow Registry | nf-core/rnaquast@0.0.0-0c7146d

nf-core/rnaquast @ 0.0.0-0c7146d

Assess the quality of an RNAseq assembly with or without a reference genome

rna assembly rnaseq de novo quality control

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Assess the quality of an RNAseq assembly with or without a reference genome

Add the following snippet to your workflow script to include this module.

include { RNAQUAST } from 'nf-core/rnaquast'

MIT License

Process

`Name`	`RNAQUAST`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`fasta` file	Specifies the transcriptome assembly FASTA file(s) to be evaluated. `*.{fasta,fa}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`reference` file	Provides the reference genome FASTA file against which transcripts will be aligned. `*.{fasta,fa}`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`gtf` file	Supplies the reference gene annotation file in GTF format for evaluating transcript accuracy and completeness. `*.{gff,gtf}`

Output 2 channels

#1 results tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `${prefix}`
`${prefix}` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ] `${prefix}`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
rnaquast	rnaQUAST is a tool for evaluating RNA-Seq assemblies using reference genome and gene database. In addition, rnaQUAST is also capable of estimating gene database coverage by raw reads and de novo quality assessment using third-party software.	https://github.com/ablab/rnaquast

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:08:20 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frnaquast/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rnaquast/blobs/sha256:ac6b085e24b3697fed1a9ace821400a528554c7303fcb04dfc1cf23f082e284e
Size	3.5 KB
Checksum	sha256:ac6b085e24b3697fed1a9ace821400a528554c7303fcb04dfc1cf23f082e284e
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:08:20 (UTC)		1	3.5 KB	-