Nextflow Registry | nf-core/rmats/prep@0.0.0-0b45cc0

nf-core/rmats/prep @ 0.0.0-0b45cc0

MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.

splicing RNA-Seq alternative splicing exon intron rMATS

Latest version: 0.0.0-0b45cc0

Total downloads: 0

Source: nf-core/modules

Authors: @akaviaLab

Maintainers: @akaviaLab

MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.

Add the following snippet to your workflow script to include this module.

include { RMATS_PREP } from 'nf-core/rmats/prep'

MIT License

Process

`Name`	`RMATS_PREP`

Input 3 channels

#1 tuple

`meta` map	Groovy Map containing sample information. e.g. `[ id:'sample1', single_end:false, strandness:'auto']`
`genome_bam` file	BAM file aligned to the genome `*.{bam}`

#2 tuple

`meta2` map	Groovy Map containing genome information
`reference_gtf` file	Annotation GTF file `*.{gtf}`

`read_length` integer	Read length in bases

Output 3 channels

#1 rmats tuple

`meta` map	Groovy Map containing sample information. e.g. `[ id:'sample1'single_end:false, strandness:'auto']`
`*.rmats` file	rmats junction count information, after processing the BAM file `*.rmats`

#2 read_outcomes tuple

`meta` map	Groovy Map containing sample information. e.g. `[ id:'sample1'single_end:false, strandness:'auto']`
`*read_outcomes_by_bam.txt` file	text file detailing number of reads used and not used for various reasons (clipped, not paired, wrong length, etc.) `*read_outcomes_by_bam.txt`

#3 versions_rmats tuple

`${task.process}` string	The process the versions were collected from
`rmats` string	The tool name
`rmats.py --version \| sed -e "s/v//g"` eval	The command used to generate the version of the tool

Tool	Description	Homepage
rmats	MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.	https://github.com/Xinglab/rmats-turbo

Version	0.0.0-0b45cc0
Commit ID	0b45cc097cafcd4768e2f79b504333fee85940bc
Release Date	29 Apr 2026 21:15:42 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frmats%2Fprep/0.0.0-0b45cc0/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rmats/prep/blobs/sha256:208a2e342aaba1daa2e9ac4d329ad82210e1b7a220726645376e2c8fb1378860
Size	3.6 KB
Checksum	sha256:208a2e342aaba1daa2e9ac4d329ad82210e1b7a220726645376e2c8fb1378860
Downloads	0

Version	Date	Status	Downloads	Size	Diff
0.0.0-0b45cc0	29 Apr 2026 21:15:42 (UTC)		0	3.6 KB	-