nf-core/rhocall/viz @ 0.0.0-0c7146d
Summary
Call regions of homozygosity and make tentative UPD calls
Get started
Add the following snippet to your workflow script to include this module.
include { RHOCALL_VIZ } from 'nf-core/rhocall/viz'
License
MIT License
Process
Name
|
RHOCALL_VIZ |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
vcf
file
|
VCF file *.{vcf}
|
#2
tuple
meta2
map
|
Groovy Map containing sample information e.g. |
|---|---|
roh
file
|
Input RHO file produced from rhocall *.{roh}
|
Output
3 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/${prefix}.bed
file
|
Bed file containing roh calls *.{bed}
|
#2
wig
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
${prefix}/${prefix}.wig
file
|
Wig file containing roh calls *.{wig}
|
#3
versions_rhocall
tuple
${task.process}
string
|
The name of the process |
|---|---|
rhocall
string
|
The name of the tool |
rhocall --version | sed 's/rhocall, version //'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rhocall | Call regions of homozygosity and make tentative UPD calls. | https://github.com/dnil/rhocall |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:07:58 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frhocall%2Fviz/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rhocall/viz/blobs/sha256:e4796927ccf3e1ba1a855f475c96fd8c601a795f3e5f85364ff604fc747876dc |
| Size | 2.4 KB |
| Checksum | sha256:e4796927ccf3e1ba1a855f475c96fd8c601a795f3e5f85364ff604fc747876dc |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:07:58 (UTC) | 1 | 2.4 KB | - |