nf-core/repeatmasker/rmouttogff3 @ 0.0.0-0c7146d
Summary
A utility script to assist to convert old RepeatMasker *.out files to version 3 gff files.
Get started
Add the following snippet to your workflow script to include this module.
include { REPEATMASKER_RMOUTTOGFF3 } from 'nf-core/repeatmasker/rmouttogff3'
License
MIT License
Process
Name
|
REPEATMASKER_RMOUTTOGFF3 |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
out
file
|
RepeatMasker out file *.{out}
|
Output
2 channels
#1
gff3
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.gff3
file
|
Sorted BAM/CRAM/SAM file *.{gff3}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| repeatmasker | RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences | https://www.repeatmasker.org/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:07:13 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frepeatmasker%2Frmouttogff3/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/repeatmasker/rmouttogff3/blobs/sha256:7772607ab0d3b4c575368eed7d098ae365b19647eee93bd5f20401d5c4e38eab |
| Size | 2.5 KB |
| Checksum | sha256:7772607ab0d3b4c575368eed7d098ae365b19647eee93bd5f20401d5c4e38eab |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:07:13 (UTC) | 1 | 2.5 KB | - |