nf-core/raxmlng @ 0.0.0-0c7146d
Summary
RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion.
Get started
Add the following snippet to your workflow script to include this module.
include { RAXMLNG } from 'nf-core/raxmlng'
License
MIT License
Process
Name
|
RAXMLNG |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information (e.g. [ id:'sample1' ]) |
|---|---|
alignment
file
|
A FASTA format multiple sequence alignment file *.{fasta,fas,fa,mfa}
|
model
string
|
The substitution model to use for the phylogenetic inference |
Output
3 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
phylogeny
tuple
meta
map
|
Groovy Map containing sample information *.{raxml.bestTree}
|
|---|---|
*.raxml.bestTree
file
|
A phylogeny in Newick format *.{raxml.bestTree}
|
#3
phylogeny_bootstrapped
tuple
meta
map
|
Groovy Map containing sample information *.{raxml.bestTree}
|
|---|---|
*.raxml.bootstraps
file
|
A phylogeny in Newick format with bootstrap values *.{raxml.bootstraps}
|
| Tool | Description | Homepage |
|---|---|---|
| raxmlng | RAxML-NG is a phylogenetic tree inference tool which uses maximum-likelihood (ML) optimality criterion. | https://github.com/amkozlov/raxml-ng |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:07:06 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fraxmlng/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/raxmlng/blobs/sha256:980a7a336fd438a62c4f01e2c1ee62d0eb4f77003a5d51ceb7b4080b1ef03a24 |
| Size | 2.9 KB |
| Checksum | sha256:980a7a336fd438a62c4f01e2c1ee62d0eb4f77003a5d51ceb7b4080b1ef03a24 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:07:06 (UTC) | 1 | 2.9 KB | - |