nf-core/raw2ometiff @ 0.0.0-0c7146d
Summary
write your description here
Get started
Add the following snippet to your workflow script to include this module.
include { RAW2OMETIFF } from 'nf-core/raw2ometiff'
License
MIT License
Process
Name
|
RAW2OMETIFF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
zarr_dir
directory
|
Tile directory must contain a full pyramid in a Zarr container. *.{zarr}
|
Output
3 channels
#1
ometiff
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
*.ome.tiff
file
|
OME-TIFF pyramid *.ome.tiff
|
#2
versions_bioformats
tuple
${task.process}
string
|
The name of the process |
|---|---|
bioformats
string
|
The name of the tool |
raw2ometiff --version |& sed -n "2s/Bio-Formats version = //p"
eval
|
The expression to obtain the version of the tool |
#3
versions_raw2ometiff
tuple
${task.process}
string
|
The name of the process |
|---|---|
raw2ometiff
string
|
The name of the tool |
raw2ometiff --version |& sed -n "1s/Version = //p"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| raw2ometiff | Java application to convert a directory of tiles to an OME-TIFF pyramid. | https://github.com/glencoesoftware/raw2ometiff |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:07:04 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fraw2ometiff/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/raw2ometiff/blobs/sha256:a42203de767f2e45b13686dc4caf70ec0a482e227734e63751e4519afb5001ef |
| Size | 2.3 KB |
| Checksum | sha256:a42203de767f2e45b13686dc4caf70ec0a482e227734e63751e4519afb5001ef |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:07:04 (UTC) | 1 | 2.3 KB | - |