nf-core/raven @ 0.0.0-0c7146d
Summary
De novo genome assembler for long uncorrected reads.
Get started
Add the following snippet to your workflow script to include this module.
include { RAVEN } from 'nf-core/raven'
License
MIT License
Process
Name
|
RAVEN |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', suffix:'bacteria' ] |
|---|---|
reads
file
|
Input file in FASTA/FASTQ format. *.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}
|
Output
3 channels
#1
gfa
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', suffix:'bacteria' ] |
|---|---|
*.gfa.gz
file
|
Repeat graph *.gfa.gz
|
#2
fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', suffix:'bacteria' ] |
|---|---|
*.fasta.gz
file
|
Assembled FASTA file *.fasta.gz
|
#3
versions_raven
tuple
${task.process}
string
|
The name of the process |
|---|---|
raven
string
|
The name of the tool |
raven --version
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| raven | Raven is a de novo genome assembler for long uncorrected reads. | https://github.com/lbcb-sci/raven |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:07:02 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fraven/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/raven/blobs/sha256:272b06d9f5f66791689adb362701290222ab912a7af160d49da25860ca4a38c5 |
| Size | 2.2 KB |
| Checksum | sha256:272b06d9f5f66791689adb362701290222ab912a7af160d49da25860ca4a38c5 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:07:02 (UTC) | 1 | 2.2 KB | - |