Nextflow Registry | nf-core/rattle/cluster@0.0.0-0c7146d

nf-core/rattle/cluster @ 0.0.0-0c7146d

Reference-free reconstruction and quantification of transcriptomes from long-read sequencing

transcriptomes cluster nanopore

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @chriswyatt1 @srisarya

Maintainers: @chriswyatt1 @srisarya

Reference-free reconstruction and quantification of transcriptomes from long-read sequencing

Add the following snippet to your workflow script to include this module.

include { RATTLE_CLUSTER } from 'nf-core/rattle/cluster'

MIT License

Process

`Name`	`RATTLE_CLUSTER`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', suffix:'bacteria' ]`
`reads` file	Input file in FASTA/FASTQ format. `*.{fasta,fastq,fasta.gz,fastq.gz,fa,fq,fa.gz,fq.gz}`

Output 2 channels

#1 clusters tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1', suffix:'bacteria' ]`
`clusters.out` file	Output clusters in binary format. `clusters.out`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
rattle	Reference-free reconstruction and quantification of transcriptomes from long-read sequencing	https://github.com/comprna/RATTLE

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:07:01 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frattle%2Fcluster/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rattle/cluster/blobs/sha256:8bfb934557950eef44320e4d0469ceea978cd395825ca7bb718376201c92f606
Size	2.1 KB
Checksum	sha256:8bfb934557950eef44320e4d0469ceea978cd395825ca7bb718376201c92f606
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:07:01 (UTC)		1	2.1 KB	-