nf-core/rasusa @ 0.0.0-0c7146d
Summary
Randomly subsample sequencing reads to a specified coverage
Get started
Add the following snippet to your workflow script to include this module.
include { RASUSA } from 'nf-core/rasusa'
License
MIT License
Process
Name
|
RASUSA |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
List of input paired-end FastQ files |
genome_size
string
|
Genome size of the species |
depth_cutoff
integer
|
Depth of coverage cutoff |
|---|
Output
2 channels
#1
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Reads with subsampled coverage *.fastq.gz
|
#2
versions_rasusa
tuple
${task.process}
string
|
The name of the process |
|---|---|
rasusa
string
|
The name of the tool |
rasusa --version 2>&1 | sed -e "s/rasusa //g"
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| rasusa | Randomly subsample sequencing reads to a specified coverage | https://github.com/mbhall88/rasusa |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:06:59 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frasusa/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rasusa/blobs/sha256:949fc61696072fb9e1b231e7f106d665dde633cabcd8ec126eb97477a13539e7 |
| Size | 2.3 KB |
| Checksum | sha256:949fc61696072fb9e1b231e7f106d665dde633cabcd8ec126eb97477a13539e7 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:06:59 (UTC) | 1 | 2.3 KB | - |