Nextflow Registry | nf-core/rastair/call@0.0.0-0c7146d

nf-core/rastair/call @ 0.0.0-0c7146d

Assess positive C->T conversion as a readout for methylation on a genome-wide basis

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @eduard-casas

Maintainers: @eduard-casas

Assess positive C->T conversion as a readout for methylation on a genome-wide basis

Add the following snippet to your workflow script to include this module.

include { RASTAIR_CALL } from 'nf-core/rastair/call'

MIT License

Process

`Name`	`RASTAIR_CALL`

Input 6 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bam` file	BAM/CRAM file `*.{bam,cram}`

#2 tuple

`meta2` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`bai` file	BAM/CRAM index file `*.{bai,crai}`

#3 tuple

`meta3` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fasta` file	Input genome fasta file `*.{fasta,fa}`

#4 tuple

`meta4` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`fai` file	FASTA index file `*.fai`

#5 tuple

`meta5` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`parsed_trim_OT` string	Number of nucleotides to trim from Original Top (OT) reads.

#6 tuple

`meta6` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`parsed_trim_OB` string	Number of nucleotides to trim from Original Bottom (OB) reads.

Output 2 channels

#1 txt tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`*.rastair_call.txt` file	Text file from Rastair call containing C->T conversion metrics `*.rastair_call.txt`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

Tool	Description	Homepage
rastair	A tool for rapid genome-wide assessment of positive C->T conversion as a readout for methylation.	https://bitbucket.org/bsblabludwig/rastair/src/master/

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:06:52 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frastair%2Fcall/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rastair/call/blobs/sha256:49dbf763a26c5e923eed7e29eb309a3fd8a06c16adec7dd11d327c3f591ef79f
Size	2.5 KB
Checksum	sha256:49dbf763a26c5e923eed7e29eb309a3fd8a06c16adec7dd11d327c3f591ef79f
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:06:52 (UTC)		1	2.5 KB	-