nf-core/rapidnj @ 0.0.0-0c7146d
Summary
Produces a Newick format phylogeny from a multiple sequence alignment using a Neighbour-Joining algorithm. Capable of bacterial genome size alignments.
Get started
Add the following snippet to your workflow script to include this module.
include { RAPIDNJ } from 'nf-core/rapidnj'
License
MIT License
Process
Name
|
RAPIDNJ |
|---|
Input
1 channel
alignment
file
|
A FASTA format multiple sequence alignment file *.{fasta,fas,fa,mfa}
|
|---|
Output
3 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
phylogeny
*.tre
file
|
A phylogeny in Newick format *.{tre}
|
|---|
#3
stockholm_alignment
*.sth
file
|
An alignment in Stockholm format *.{sth}
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| rapidnj | RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations. | https://birc.au.dk/software/rapidnj |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:06:50 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Frapidnj/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/rapidnj/blobs/sha256:0de4a9ae8d55d81db9a8722072e5c8818bb6b07be8714f4cf3c9e14877d2c632 |
| Size | 2.3 KB |
| Checksum | sha256:0de4a9ae8d55d81db9a8722072e5c8818bb6b07be8714f4cf3c9e14877d2c632 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:06:50 (UTC) | 1 | 2.3 KB | - |