nf-core/quantmsutils/mzmlstatistics @ 0.0.0-0c7146d
Summary
Generate statistics from mzML files using quantms-utils
Get started
Add the following snippet to your workflow script to include this module.
include { QUANTMSUTILS_MZMLSTATISTICS } from 'nf-core/quantmsutils/mzmlstatistics'
License
MIT License
Process
Name
|
QUANTMSUTILS_MZMLSTATISTICS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
ms_file
file
|
Input mzML file *.{mzML,mzml}
|
Output
5 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*.log
file
|
Log file *.log
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#3
ms_statistics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*_ms_info.parquet
file
|
MS statistics in parquet format *_ms_info.parquet
|
#4
ms2_statistics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*_ms2_info.parquet
file
|
MS2 statistics in parquet format (optional) *_ms2_info.parquet
|
#5
feature_statistics
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', name:'test' ] |
|---|---|
*_feature_info.parquet
file
|
Feature statistics in parquet format (optional) *_feature_info.parquet
|
| Tool | Description | Homepage |
|---|---|---|
| quantms-utils | A Python package for quantitative mass spectrometry data analysis | https://github.com/bigbio/quantms-utils |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:06:36 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fquantmsutils%2Fmzmlstatistics/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/quantmsutils/mzmlstatistics/blobs/sha256:e8b3ba7f527800f4c23b063a38d90c6b978d83bcb97fb7ae665266fa9b1b638a |
| Size | 2.7 KB |
| Checksum | sha256:e8b3ba7f527800f4c23b063a38d90c6b978d83bcb97fb7ae665266fa9b1b638a |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:06:36 (UTC) | 1 | 2.7 KB | - |