Nextflow Registry | nf-core/quantmsutils/dianncfg@0.0.0-0c7146d

nf-core/quantmsutils/dianncfg @ 0.0.0-0c7146d

Generate DIA-NN configuration arguments from enzyme and Unimod modification parameters. This module uses quantms-utils to convert enzyme and modification specifications into DIA-NN-compatible command-line arguments. Only supports Unimod modifications. For custom modifications, pass arguments directly to the DIANN module.

quantms-utils diann configuration enzyme modifications

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @daichengxin @pinin4fjords

Maintainers: @daichengxin @pinin4fjords

Summary

Get started

Add the following snippet to your workflow script to include this module.

include { QUANTMSUTILS_DIANNCFG } from 'nf-core/quantmsutils/dianncfg'

License

MIT License

Process

`Name`	`QUANTMSUTILS_DIANNCFG`

Input 1 channel

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`enzyme` string	Enzyme name for protein digestion (e.g., 'Trypsin', 'Trypsin/P') `.*`
`fixed_modifications` string	Fixed modifications in Unimod format (e.g., 'Carbamidomethyl (C)') `.*`
`variable_modifications` string	Variable modifications in Unimod format (e.g., 'Oxidation (M)') `.*`

Output 3 channels

#1 log

`*.log` file	Log file from configuration generation `*.log`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 diann_cfg tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`diann_config.cfg` file	DIA-NN configuration file containing command-line arguments `diann_config.cfg`

Tool	Description	Homepage
quantms-utils	quantms-utils is a Python package with scripts and functions for quantitative proteomics data analysis. The dianncfg command converts enzyme and modification parameters to DIA-NN-compatible format.	https://github.com/bigbio/quantms-utils

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:06:34 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fquantmsutils%2Fdianncfg/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/quantmsutils/dianncfg/blobs/sha256:de3a4a80ac60aaa607fddd501a0fa2df7a50fbefe93799b395f7d28460c341ed
Size	2.6 KB
Checksum	sha256:de3a4a80ac60aaa607fddd501a0fa2df7a50fbefe93799b395f7d28460c341ed
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:06:34 (UTC)		1	2.6 KB	-