Nextflow Registry | nf-core/pygenprop/build@0.0.0-0c7146d

nf-core/pygenprop/build @ 0.0.0-0c7146d

Generate a Micromeda file containing pathway annotations for one or more genomes. Supporting InterProScan and protein sequence information can also be optionally incorporated.

genome properties functional annotation interproscan pathway analysis micromeda

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @vagkaratzas

Maintainers: @vagkaratzas

Summary

Generate a Micromeda file containing pathway annotations for one or more genomes. Supporting InterProScan and protein sequence information can also be optionally incorporated.

Get started

Add the following snippet to your workflow script to include this module.

include { PYGENPROP_BUILD } from 'nf-core/pygenprop/build'

License

MIT License

Process

`Name`	`PYGENPROP_BUILD`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`ips` file	InterProScan TSV output file `*.tsv`

`gp_txt` file	Genome Properties flatfile (e.g. genomeProperties.txt) This file can be found on the original archived repository link below: https://raw.githubusercontent.com/ebi-pf-team/genome-properties/refs/heads/master/flatfiles/genomeProperties.txt `*.txt`

Output 3 channels

#1 meda tuple

`meta` map	Groovy Map containing sample information e.g. `[ id:'sample1' ]`
`*.micro` file	Micromeda SQLite database containing Genome Properties assignments `*.micro`

#2 versions_python tuple

`${task.process}` string	The name of the process
`python` string	The name of the tool
`python -V \| sed "s/Python //g"` eval	The expression to obtain the version of the tool

#3 versions_pygenprop tuple

`${task.process}` string	The name of the process
`pygenprop` string	The name of the tool
`"1.1"` string	The expression to obtain the version of the tool

Tool	Description	Homepage
pygenprop	A python library for programmatic usage of EBI InterPro Genome Properties.	https://github.com/Micromeda/pygenprop

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:06:07 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpygenprop%2Fbuild/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pygenprop/build/blobs/sha256:9622a7fba199eee9f1057ea610560e3e92889c0e6a64433d3131e209a8da13ad
Size	2.8 KB
Checksum	sha256:9622a7fba199eee9f1057ea610560e3e92889c0e6a64433d3131e209a8da13ad
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:06:07 (UTC)		1	2.8 KB	-