nf-core/purgedups/splitfa @ 0.0.0-0c7146d
Summary
Split fasta file by 'N's to aid in self alignment for duplicate purging
Get started
Add the following snippet to your workflow script to include this module.
include { PURGEDUPS_SPLITFA } from 'nf-core/purgedups/splitfa'
License
MIT License
Process
Name
|
PURGEDUPS_SPLITFA |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
assembly
file
|
Draft assembly file *.fasta
|
Output
2 channels
#1
split_fasta
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.split.fasta.gz
file
|
Fasta split by N's *.fasta.gz
|
#2
versions_purgedups
tuple
${task.process}
string
|
The name of the process |
|---|---|
purge_dups
string
|
The name of the tool |
1.2.6
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| purgedups | Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth | https://github.com/dfguan/purge_dups |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:05:56 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpurgedups%2Fsplitfa/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/purgedups/splitfa/blobs/sha256:dbcfd6fbd43c9b7d5ed7d950f460f9536e313ca4319d0ce0e1d48d64bac45b48 |
| Size | 2.2 KB |
| Checksum | sha256:dbcfd6fbd43c9b7d5ed7d950f460f9536e313ca4319d0ce0e1d48d64bac45b48 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:05:56 (UTC) | 1 | 2.2 KB | - |