nf-core/purgedups/pbcstat @ 0.0.0-0c7146d
Summary
Create read depth histogram and base-level read depth for an assembly based on pacbio data
Get started
Add the following snippet to your workflow script to include this module.
include { PURGEDUPS_PBCSTAT } from 'nf-core/purgedups/pbcstat'
License
MIT License
Process
Name
|
PURGEDUPS_PBCSTAT |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
paf_alignment
file
|
PAF alignment file *.paf
|
Output
3 channels
#1
stat
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.PB.stat
file
|
PacBio Statistic file *.PB.stat
|
#2
basecov
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.PB.base.cov
file
|
PacBio Base coverage file *.PB.base.cov
|
#3
versions_purgedups
tuple
${task.process}
string
|
The name of the process |
|---|---|
purge_dups
string
|
The name of the tool |
1.2.6
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| purgedups | Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth | https://github.com/dfguan/purge_dups |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:05:52 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpurgedups%2Fpbcstat/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/purgedups/pbcstat/blobs/sha256:a9400c3c4a9a2ba015ad57cda2160ece10a4986918f0f62097cd8f3bf8cc7bf2 |
| Size | 2.3 KB |
| Checksum | sha256:a9400c3c4a9a2ba015ad57cda2160ece10a4986918f0f62097cd8f3bf8cc7bf2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:05:52 (UTC) | 1 | 2.3 KB | - |