nf-core/purgedups/calcuts @ 0.0.0-0c7146d
Summary
Calculate coverage cutoffs to determine when to purge duplicated sequence.
Get started
Add the following snippet to your workflow script to include this module.
include { PURGEDUPS_CALCUTS } from 'nf-core/purgedups/calcuts'
License
MIT License
Process
Name
|
PURGEDUPS_CALCUTS |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
stat
file
|
Histogram of coverage *.stat
|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.calcuts.log
file
|
Log file .calcuts.log
|
#2
cutoff
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.cutoffs
file
|
Cutoff file *.cutoffs
|
#3
versions_purgedups
tuple
${task.process}
string
|
The name of the process |
|---|---|
purge_dups
string
|
The name of the tool |
1.2.6
string
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| purgedups | Purge_dups is a package used to purge haplotigs and overlaps in an assembly based on read depth | https://github.com/dfguan/purge_dups |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:05:47 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpurgedups%2Fcalcuts/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/purgedups/calcuts/blobs/sha256:a89b1609730b73d10967a7a70217dfc3e6340a843ed48db7ef363e422e6be357 |
| Size | 2.5 KB |
| Checksum | sha256:a89b1609730b73d10967a7a70217dfc3e6340a843ed48db7ef363e422e6be357 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:05:47 (UTC) | 1 | 2.5 KB | - |