nf-core/proteinortho @ 0.0.0-0c7146d
Summary
Proteinortho is a tool to detect orthologous genes within different species.
Get started
Add the following snippet to your workflow script to include this module.
include { PROTEINORTHO } from 'nf-core/proteinortho'
License
MIT License
Process
Name
|
PROTEINORTHO |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. |
|---|---|
fasta_files
file
|
Input fasta files (proteomes or transcriptomes), at least 2 are needed *.{fa,fasta,faa,fna,fn}
|
Output
4 channels
#1
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
#2
blastgraph
tuple
meta
file
|
Orthology table *.proteinortho.tsv
|
|---|---|
${prefix}.blast-graph
file
|
BLAST graph *.blast-graph
|
#3
orthologgraph
tuple
meta
file
|
Orthology table *.proteinortho.tsv
|
|---|---|
${prefix}.proteinortho-graph
file
|
Orthology graph *.proteinortho-graph
|
#4
orthologgroups
tuple
meta
file
|
Orthology table *.proteinortho.tsv
|
|---|---|
${prefix}.proteinortho.tsv
file
|
Orthology table *.proteinortho.tsv
|
| Tool | Description | Homepage |
|---|---|---|
| proteinortho | Proteinortho is a tool to detect orthologous genes within different species. | https://gitlab.com/paulklemm_PHD/proteinortho |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:05:34 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fproteinortho/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/proteinortho/blobs/sha256:0bb77fbfeb30c68ca161160318a83c413c67dd0a3c8c6b4b944f5da443cb37f2 |
| Size | 2.4 KB |
| Checksum | sha256:0bb77fbfeb30c68ca161160318a83c413c67dd0a3c8c6b4b944f5da443cb37f2 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:05:34 (UTC) | 1 | 2.4 KB | - |