Nextflow Registry | nf-core/propr/grea@0.0.0-0c7146d

nf-core/propr/grea @ 0.0.0-0c7146d

Perform Gene Ratio Enrichment Analysis

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @caraiz2001 @suzannejin

Maintainers: @caraiz2001 @suzannejin

Perform Gene Ratio Enrichment Analysis

Add the following snippet to your workflow script to include this module.

include { PROPR_GREA } from 'nf-core/propr/grea'

MIT License

Process

`Name`	`PROPR_GREA`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing data information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`adjacency` file	Adjacency matrix representing the graph connections (ie. 1 for edges, 0 otherwise). This can be the adjacency matrix output from gene ratio approaches like propr/propd. `*.{csv,tsv}`

#2 tuple

`meta2` map	Groovy Map containing data information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`gmt` file	A tab delimited file format that describes gene sets. The first column is the concept id (eg. GO term, pathway, etc), the second column is the concept description, and the rest are nodes (eg. genes) that is associated to the given concept. `*.{gmt}`

Output 3 channels

#1 results tuple

`meta` file	Groovy Map containing sample information. This can be used at the workflow level to pass optional parameters to the module. [id: 'test', ...]
`*.grea.tsv` file	Output file containing the information about the tested concepts (ie. gene sets) and enrichment statistics. `*.grea.tsv`

#2 versions

`versions.yml` file	File containing software versions `versions.yml`

#3 session_info

`*.R_sessionInfo.log` file	dump of R SessionInfo `*.R_sessionInfo.log`

Tool	Description	Homepage
grea	Gene Ratio Enrichment Analysis	https://github.com/tpq/propr

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:05:23 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpropr%2Fgrea/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/propr/grea/blobs/sha256:8789821a59081e3ae98c953c3f49a885f2c00b3cdb9285903245f5d41b6a0e39
Size	6.1 KB
Checksum	sha256:8789821a59081e3ae98c953c3f49a885f2c00b3cdb9285903245f5d41b6a0e39
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:05:23 (UTC)		1	6.1 KB	-