Nextflow Registry | nf-core/prodigal@0.0.0-0c7146d

nf-core/prodigal @ 0.0.0-0c7146d

Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program

prokaryotes gene finding microbial

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @grst

Maintainers: @grst

Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program

Add the following snippet to your workflow script to include this module.

include { PRODIGAL } from 'nf-core/prodigal'

MIT License

Process

`Name`	`PRODIGAL`

Input 2 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`genome` file	fasta/fasta.gz file

`output_format` string	Output format ("gbk"/"gff"/"sqn"/"sco")

Output 5 channels

#1 versions

`versions.yml` file	File containing software versions `versions.yml`

#2 amino_acid_fasta tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.faa.gz` file	protein translations file `*.{faa}`

#3 gene_annotations tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.${output_format}.gz` file	gene annotations in output_format given as input `*.{output_format}`

#4 nucleotide_fasta tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}.fna.gz` file	nucleotide sequences file `*.{fna}`

#5 all_gene_annotations tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
`${prefix}_all.txt.gz` file	complete starts file `*.{_all.txt}`

Tool	Description	Homepage
prodigal	Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program	https://github.com/hyattpd/Prodigal

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:05:16 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fprodigal/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/prodigal/blobs/sha256:b5b6a5f662bcd73b72885104a86e6e882df373e3e95eae383e46834850fb6774
Size	2.8 KB
Checksum	sha256:b5b6a5f662bcd73b72885104a86e6e882df373e3e95eae383e46834850fb6774
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:05:16 (UTC)		1	2.8 KB	-