nf-core/porechop/abi @ 0.0.0-0c7146d
Summary
Extension of Porechop whose purpose is to process adapter sequences in ONT reads.
Get started
Add the following snippet to your workflow script to include this module.
include { PORECHOP_ABI } from 'nf-core/porechop/abi'
License
MIT License
Process
Name
|
PORECHOP_ABI |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
reads
file
|
fastq/fastq.gz file *.{fastq,fastq.gz,fq,fq.gz}
|
custom_adapters
file
|
Text file containing custom adapters |
|---|
Output
3 channels
#1
log
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.log
file
|
Log file containing stdout information *.log
|
#2
reads
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fastq.gz
file
|
Adapter-trimmed fastq.gz file *.fastq.gz
|
#3
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| porechop_abi | Extension of Porechop whose purpose is to process adapter sequences in ONT reads. | https://github.com/bonsai-team/Porechop_ABI |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:04:57 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fporechop%2Fabi/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/porechop/abi/blobs/sha256:f042e891622175ac98a0041f489690cceb2d085f7813a5bd377ba8714631b0af |
| Size | 2.8 KB |
| Checksum | sha256:f042e891622175ac98a0041f489690cceb2d085f7813a5bd377ba8714631b0af |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:04:57 (UTC) | 1 | 2.8 KB | - |