nf-core/pmdtools/filter @ 0.0.0-0c7146d
Summary
pmdtools command to filter ancient DNA molecules from others
Get started
Add the following snippet to your workflow script to include this module.
include { PMDTOOLS_FILTER } from 'nf-core/pmdtools/filter'
License
MIT License
Process
Name
|
PMDTOOLS_FILTER |
|---|
Input
3 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
bam
file
|
BAM file *.bam
|
bai
file
|
BAM index file *.bai
|
threshold
float
|
Post-mortem damage score threshold |
|---|
reference
file
|
FASTA file *.{fa,fasta}
|
|---|
Output
2 channels
#1
bam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bam
file
|
Filtered BAM file *.bam
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| pmdtools | Compute postmortem damage patterns and decontaminate ancient genomes | https://github.com/pontussk/PMDtools |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:04:44 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fpmdtools%2Ffilter/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/pmdtools/filter/blobs/sha256:19938479915ebb4daca71f640eb2d0733a825e05406ee0b899ea52cd70d62f53 |
| Size | 2.7 KB |
| Checksum | sha256:19938479915ebb4daca71f640eb2d0733a825e05406ee0b899ea52cd70d62f53 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:04:44 (UTC) | 1 | 2.7 KB | - |