nf-core/plink2/score @ 0.0.0-0c7146d
Summary
Apply a scoring system to each sample in a plink 2 fileset
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK2_SCORE } from 'nf-core/plink2/score'
License
MIT License
Process
Name
|
PLINK2_SCORE |
|---|
Input
2 channels
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
pgen
file
|
PLINK 2 binary genotype table *.{pgen}
|
psam
file
|
PLINK 2 sample information file *.{psam}
|
pvar
file
|
PLINK 2 variant information file *.{pvar}
|
scorefile
file
|
A text file containing variant identifiers and weights *.{scores,txt,scorefile}
|
|---|
Output
2 channels
#1
score
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.sscore
file
|
A text file containing sample scores, in plink 2 .sscore format *.{sscore}
|
#2
versions
versions.yml
file
|
File containing software versions versions.yml
|
|---|
| Tool | Description | Homepage |
|---|---|---|
| plink2 | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner | http://www.cog-genomics.org/plink/2.0/ |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:04:37 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fplink2%2Fscore/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/plink2/score/blobs/sha256:8edebe8b1825b6abbea4218bf0ee7bc6e3c4c970d3e13bd7dbfbb2733fe27c50 |
| Size | 2.7 KB |
| Checksum | sha256:8edebe8b1825b6abbea4218bf0ee7bc6e3c4c970d3e13bd7dbfbb2733fe27c50 |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:04:37 (UTC) | 1 | 2.7 KB | - |