nf-core/plink/vcf @ 0.0.0-0c7146d
Summary
Analyses variant calling files using plink
Get started
Add the following snippet to your workflow script to include this module.
include { PLINK_VCF } from 'nf-core/plink/vcf'
License
MIT License
Process
Name
|
PLINK_VCF |
|---|
Input
1 channel
#1
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
vcf
file
|
Variant calling file (vcf) *.{vcf}
|
Output
4 channels
#1
bed
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bed
file
|
PLINK binary biallelic genotype table *.{bed}
|
#2
bim
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.bim
file
|
PLINK extended MAP file *.{bim}
|
#3
fam
tuple
meta
map
|
Groovy Map containing sample information e.g. [ id:'test', single_end:false ] |
|---|---|
*.fam
file
|
PLINK sample information file *.{fam}
|
#4
versions_plink
tuple
${task.process}
string
|
The name of the process |
|---|---|
plink
string
|
The name of the tool |
plink --version 2>&1 | sed 's/^PLINK v//;s/ .*//'
eval
|
The expression to obtain the version of the tool |
| Tool | Description | Homepage |
|---|---|---|
| plink | Whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner | https://www.cog-genomics.org/plink |
| Version | 0.0.0-0c7146d |
|---|---|
| Commit ID | 135d883a43b1a2324b4112cd270cf22e20835533 |
| Release Date | 08 Apr 2026 19:04:24 (UTC) |
| Download URL | https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fplink%2Fvcf/0.0.0-0c7146d/download |
| OCI Store URL | https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/plink/vcf/blobs/sha256:733f1a9d984d7b46d279dc9493857474fbaceab306ca2e299d1735feed4be25e |
| Size | 2.6 KB |
| Checksum | sha256:733f1a9d984d7b46d279dc9493857474fbaceab306ca2e299d1735feed4be25e |
| Downloads | 1 |
| Version | Date | Status | Downloads | Size | Diff |
|---|---|---|---|---|---|
| 0.0.0-0c7146d | 08 Apr 2026 19:04:24 (UTC) | 1 | 2.6 KB | - |