Nextflow Registry | nf-core/platypus@0.0.0-0c7146d

nf-core/platypus @ 0.0.0-0c7146d

Platypus is a tool that efficiently and accurately calling genetic variants from next-generation DNA sequencing data

variant call dna genetic

Latest version: 0.0.0-0c7146d

Total downloads: 1

Source: nf-core/modules

Authors: @kubranarci

Maintainers: @kubranarci

Platypus is a tool that efficiently and accurately calling genetic variants from next-generation DNA sequencing data

Add the following snippet to your workflow script to include this module.

include { PLATYPUS } from 'nf-core/platypus'

MIT License

Process

`Name`	`PLATYPUS`

Input 4 channels

#1 tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`tumor_file` file	Tumor or metastatic sample, BAM or CRAM file `*.{bam,cram}`
`tumor_file_bai` file	Index of BAM file `*.{bai,crai}`
`control_file` file	Control (or blood) of matching tumor/metastatic sample, BAM or CRAM file `*.{bam,cram}`
`control_file_bai` file	Index of BAMfile `*.{bai,crai}`

`fasta` file	The reference fasta file `*.fa`

`fai` file	Index of reference fasta file `*.fai`

`skipregions_file` file	File with regions to skip, region as comma-separated list of chr:start-end, or just list of chr, or nothing `.bed\|.txt\|*.tab`

Output 4 channels

#1 log tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`*.log` file	Log file `*.log`

#2 tbi tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`*.vcf.gz.tbi` file	Index of VCF file `*.vcf.gz.tbi`

#3 vcf tuple

`meta` map	Groovy Map containing sample information e.g. [ id:'test']
`*.vcf.gz` file	Output VCF file `*.vcf.gz`

#4 version

`versions.yml` file	File containing software version `*.{version.txt}`

Tool	Description	Homepage
platypus	Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data.	https://www.well.ox.ac.uk/research/research-groups/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data

Version	0.0.0-0c7146d
Commit ID	135d883a43b1a2324b4112cd270cf22e20835533
Release Date	08 Apr 2026 19:03:31 (UTC)
Download URL	https://registry-stage.nextflow.io/api/v1/modules/nf-core%2Fplatypus/0.0.0-0c7146d/download
OCI Store URL	https://public.cr.stage-seqera.io/v2/nextflow/plugin-stage/modules/nf-core/platypus/blobs/sha256:7f398bcd9436163707db07d37120c8a53758a2b8daf7a31b7c4dee6f6005d526
Size	3.3 KB
Checksum	sha256:7f398bcd9436163707db07d37120c8a53758a2b8daf7a31b7c4dee6f6005d526
Downloads	1

Version	Date	Status	Downloads	Size	Diff
0.0.0-0c7146d	08 Apr 2026 19:03:31 (UTC)		1	3.3 KB	-